![]() ![]() VConTACT clustering of known Neisseria phages, phages that infect other bacterial taxa, and either VirSorter2 or Seeker predictions. Hierarchical clustering memberships of each indicated cluster are presented in Data set S1, tab 2. Information about plasmids and the GGI are provided in Table S1, tab D. Only predictions that cluster with known Neisseria plasmids or the GGI are included in the dendrograms. Beneath the dendrogram, color strips indicate the Neisseria species in which the MGE was identified (top strip) and whether the MGE is a known plasmid/GGI or a predicted prophage (bottom strip). In panel A, individual clusters are highlighted by alternating light and dark gray clade shading. Average-linkage hierarchical clustering was performed using SciPy based on percent length aligned nucleotide sequence, and the resulting dendrograms were visualized with iTOL. (A and B) Dendrograms representing clustering of dereplicated predictions from all tools with known Neisseria plasmids (A) and the gonococcal genetic island (GGI) (B). Few predictions cluster with known Neisseria plasmids or genetic islands based on percent length aligned nucleotide sequences. ![]()
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